PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011473-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 438aa    MW: 48425.1 Da    PI: 7.2844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011473-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.4e-08364404954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  WALNUT_00011473-RA 364 ARQRRERISEKIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 404
                         69******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14360423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-10361409No hitNo description
SMARTSM003539.3E-13361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12363418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5364404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEGLGWDGSL LVTNTPSLWS NQQHVEESMV LSNSNSSVLI NPIQALQEAQ TSHVLASSDK  60
VGVMFQPLTL VSDSMKFVSN TNLSDRQEAM RLAAEAMVAK PGAGTSLGED LTSELCPSPL  120
MINGHYITNP LSGFWSDFYM SKQSQLLNGL QNGKECLLSD TNNKDTSAEH DGIPTMFSNC  180
RNLWNFGSGS TAISSGESEN NASNARNKDM HCSVNELEER VSKSSSEFYG YHEKFRESKP  240
VSTKRSSSDQ RELKAGQNYH SSYLLQTDSA TTRGGFKLIS ENPPKSKKSR SEKRPSTSNI  300
NFQQSGSSVS SSIVEPDPEA ITQMKEMIYR AAAFRPVVNL GLEVVEKPKR KNVRISTDPQ  360
TVAARQRRER ISEKIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA LENLSHQLDS  420
MNYPPTDIAF SFHPSFPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364369RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024383.11e-151Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
SwissprotQ8S3D22e-80BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A061GAT21e-151A0A061GAT2_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGVIT_09s0002g02700.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-71bHLH family protein